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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53307863_53308544_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53307863 - 53308544
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTCTTTCATT
Flanking Amino Acid:
HFKNLGNPPWASEDGCQSSA
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.9
0.81
0.8
77.9
35.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
68
0.65
1.7
84.22
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006698
53302440 - 53308738
6299