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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5332541_5334041_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5332541 - 5334041
Intron Length:
1501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TATGGTTTCATT
Flanking Amino Acid:
ICEEKAPVLKMELDRSADPP
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.1
0.81
0.7
85.1
29.3
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
46.4
-0.2
2.2
68.01
43.8

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065