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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5334267_5334604_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5334267 - 5334604
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ACTTGCTTGATT
Flanking Amino Acid:
ALLLNRDGTQCLSGSSDGTI
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
68.6
0.42
1
65.9
44.5
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
62.3
0.47
1.8
76.81
40.4

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065