About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_533446_540830_F

Intron Information:

Intron Rank:
139646
Intron Class:
major
Intron Phase:
Intron Coordinates:
533446 - 540830
Intron Length:
7385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTCTCTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69
0.43
1
63.2
37.4
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
56.7
0.19
1.9
73.29
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031366
533321 - 543806
10486