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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5334707_5335587_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5334707 - 5335587
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGAATGTTAATG
Flanking Amino Acid:
TVIVSGSTEKVLRVWDPRTC
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71.7
0.49
1
66.8
39.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
45.5
-0.4
2.1
47.71
39.6

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065