About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53363876_53431388_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53363876 - 53431388
Intron Length:
67513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
CCCTTGCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
CTGACATTATAT
Flanking Amino Acid:
PPQEAETMVKPQETASRSHT
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
58.2
46.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
34.7
-1.7
3.5
46.9
48.5
Minor BPS
46
-0.2
2
63.22
46.3

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000027796
53363789 - 53604329
240541
ENSAPLT00000006831
53363789 - 53604329
240541