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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5339160_5339270_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5339160 - 5339270
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAC
5'SS Class:
major
3'SS Sequence:
TACTTTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
ACATTGTTGACT
Flanking Amino Acid:
FCMSTLRTHKDYVKALAYAK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
73.6
30.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.6
0.62
0.9
73.1
36.9
Minor 5ss
27.7
-2.6
2.9
33.7
41.9
Minor BPS
51.2
0.12
2.1
69.17
42

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065