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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5339354_5339629_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5339354 - 5339629
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTCCAATC
Flanking Amino Acid:
DIVLCCNGKTLISASSDTTV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
0.9
68.1
37.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
52.6
0.06
1.8
70.6
35

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065