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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5341170_5348130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5341170 - 5348130
Intron Length:
6961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
GAATGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATACCATAATC
Flanking Amino Acid:
QNTAGRRKVQVSYVIRDEVE
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
67.1
0.39
1
62.9
43.6
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
59.7
0.29
1.6
68.3
36.5

Associated Gene:

Gene:
WDR48
Ensembl Gene ID:
ENSAPLG00000012688
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013201
5323114 - 5348178
25065