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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53441712_53445674_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53441712 - 53445674
Intron Length:
3963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGG
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ACTCTCTTACTC
Flanking Amino Acid:
GRSCLLRSFNFCKYACHRKC
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
63
43.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.4
0.71
0.8
80.3
31.8
Minor 5ss
42.5
-0.8
2.8
59.2
45.2
Minor BPS
54
0.1
1.6
61.27
38.6

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021857
53441666 - 53604329
162664