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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53491104_53491935_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53491104 - 53491935
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
AATTTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAACT
Flanking Amino Acid:
KNSFSCDKGSQSADFEHIME
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
75.9
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.2
0.66
0.9
73
36.4
Minor 5ss
42.5
-0.8
3.2
65
40.2
Minor BPS
82.4
1.1
1.2
96.74
27.7

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896
ENSAPLT00000027796
53363789 - 53604329
240541