Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53498102_53500235_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53498102 - 53500235

Intron Length:

2134

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCAATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

TTTTTCCCAATA

Flanking Amino Acid:

PQHVVVIHCKGGKGRIGVVI

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.4

38.7

Major BPS

73.5

0.58

79.3

29.4

Major PPT

76.4

0.59

0.9

70.4

33.9

Minor 5ss

25.2

-2.9

3.2

43.6

Minor BPS

58.5

0.26

1.8

76.03

35.2

Associated Gene:

Gene:

TNS3

Ensembl Gene ID:

ENSAPLG00000006520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021857

53441666 - 53604329

162664

ENSAPLT00000006831

53363789 - 53604329

240541

ENSAPLT00000040958

53363789 - 53604329

240541

ENSAPLT00000039692

53476170 - 53605065

128896

ENSAPLT00000027796

53363789 - 53604329

240541