Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53500301_53503197_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53500301 - 53503197

Intron Length:

2897

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTGTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAATAAC

U12 Branch Point Sequence:

ACTGGAATAACA

Flanking Amino Acid:

SYMHFTNVSASADQALDRFA

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

30.2

Major BPS

52.4

0.06

1.2

37.3

Major PPT

82.8

0.74

0.9

83.9

31.1

Minor 5ss

45.5

-0.5

2.9

64.1

47.4

Minor BPS

42.6

-0.5

2.2

55.63

43.2

Associated Gene:

Gene:

TNS3

Ensembl Gene ID:

ENSAPLG00000006520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021857

53441666 - 53604329

162664

ENSAPLT00000006831

53363789 - 53604329

240541

ENSAPLT00000039692

53476170 - 53605065

128896

ENSAPLT00000027796

53363789 - 53604329

240541