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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53500301_53505915_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53500301 - 53505915
Intron Length:
5615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAATA
Flanking Amino Acid:
SYMHFTNVSARYVQFLSGLL
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.7
85.6
28.6
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
60.5
0.33
1.8
76.96
33.8

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040958
53363789 - 53604329
240541