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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53506029_53507169_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53506029 - 53507169
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
GACTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTTGTTGACT
Flanking Amino Acid:
HGIPSFDAGGACRPFLKLYQ
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.1
0.74
0.8
80.5
36.8
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
68.1
0.65
2.1
90.53
33.5

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896
ENSAPLT00000027796
53363789 - 53604329
240541