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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53512484_53513442_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53512484 - 53513442
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGTC
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTAGCTTTTATT
Flanking Amino Acid:
SKEDLDNANKDDRFPDYGKV
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
72.7
37.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.6
0.91
0.7
88.8
26.8
Minor 5ss
36.2
-1.6
3.5
52.7
44.5
Minor BPS
58.6
0.35
1.7
76.05
41

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027796
53363789 - 53604329
240541
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896