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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53590220_53592723_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53590220 - 53592723
Intron Length:
2504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTAACACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
PPSVLQLNKKVGDLSNELVR
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.5
0.71
0.9
77.7
34.4
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027796
53363789 - 53604329
240541
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896