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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53592820_53596012_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53592820 - 53596012
Intron Length:
3193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATCTTGTTAATT
Flanking Amino Acid:
LKGCPNEPYFGSLTALVYQH
Intron Amino Acid Position:
1392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.8
0.58
0.9
69.6
35.5
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
59.6
0.38
2
77.24
40.1

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896
ENSAPLT00000027796
53363789 - 53604329
240541