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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53601819_53603182_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53601819 - 53603182
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTAAAAT
Flanking Amino Acid:
QGITLTDNQRKLFFRRHYPA
Intron Amino Acid Position:
1500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.1
0.74
0.7
80.6
24.7
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
64.4
0.53
1.8
82.08
39

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896
ENSAPLT00000027796
53363789 - 53604329
240541
ENSAPLT00000021857
53441666 - 53604329
162664