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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53603252_53603410_F

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53603252 - 53603410
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TATGGACGTCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
IFCALDPQDRKWMKDGLSAK
Intron Amino Acid Position:
1523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
51
0.02
1.2
46.3
45
Minor 5ss
40.4
-1.1
2.9
49
41.4
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027796
53363789 - 53604329
240541
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896