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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53603438_53604184_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53603438 - 53604184
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGTTCTCTGACA
Flanking Amino Acid:
RKWMKDGLSAKVFGFVARKQ
Intron Amino Acid Position:
1532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
64.1
0.44
1.6
76.06
34.6

Associated Gene:

Gene:
TNS3
Ensembl Gene ID:
ENSAPLG00000006520
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021857
53441666 - 53604329
162664
ENSAPLT00000006831
53363789 - 53604329
240541
ENSAPLT00000040958
53363789 - 53604329
240541
ENSAPLT00000039692
53476170 - 53605065
128896
ENSAPLT00000027796
53363789 - 53604329
240541