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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5362988_5364617_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5362988 - 5364617
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAAAACC
5'SS Class:
major
3'SS Sequence:
TATTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTTTTAATA
Flanking Amino Acid:
DLDPYYSDHKTFMVINKKRN
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
67
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
77.9
34.9
Minor 5ss
30.5
-2.2
2.7
36.6
40
Minor BPS
77.2
0.85
1
79.7
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981