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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5366209_5367388_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5366209 - 5367388
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTATAGCT
Flanking Amino Acid:
NSLPPQLNWTEHLFTGIYTG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.81
0.7
84.2
23.6
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
61.5
0.44
1.8
83.51
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981