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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5367518_5371054_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5367518 - 5371054
Intron Length:
3537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GGTGGTTTAATT
Flanking Amino Acid:
NCLDLVVIIVTYVSICKTSG
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.1
0.72
0.8
76.8
37
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
52.5
0.16
1.9
68.79
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981