About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5376586_5378078_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5376586 - 5378078
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCAAA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTCTTTTACA
Flanking Amino Acid:
NAHQILEKEQMLAAGENDKA
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
68
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.2
0.88
0.7
83.7
31.3
Minor 5ss
41.1
-1
2.5
48.9
47
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981