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Intron Name: Anas_platyrhynchos_platyrhynchos_2_5378271_5380600_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5378271 - 5380600

Intron Length:

2330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTAACCAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TCTTTCTAACCA

Flanking Amino Acid:

SQPNHCQKKLRQILLSYELS

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

75.9

0.64

66.1

40.5

Major PPT

0.34

1.1

65.1

34.3

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

55.3

0.16

70.02

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040731

5362715 - 5401695

38981