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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_53804611_53805385_F

Intron Information:

Intron Rank:
133812
Intron Class:
major
Intron Phase:
Intron Coordinates:
53804611 - 53805385
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
TTATTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.7
0.8
0.8
77.9
40.2
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021948
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046184
53758577 - 53805422
46846