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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5383830_5385034_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5383830 - 5385034
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCATT
5'SS Class:
major
3'SS Sequence:
GTTTTACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTGTTTTACTT
Flanking Amino Acid:
FSANLSFFRLLRIFKLAKIW
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
76.4
38.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.3
0.77
0.8
78.1
35.3
Minor 5ss
45.5
-0.5
2.9
63.7
41.9
Minor BPS
53.7
0.19
1.7
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981