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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5387099_5388754_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5387099 - 5388754
Intron Length:
1656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAAAT
U12 Branch Point Sequence:
AACAGATAAATT
Flanking Amino Acid:
VYTEMEYRKRRFDVGSYSEA
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
56.8
0.17
1.2
65.3
38.6
Major PPT
84
0.77
0.8
80.4
31.6
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
40.2
-0.6
2.1
53.16
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981