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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5388867_5389892_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5388867 - 5389892
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATGAAA
Flanking Amino Acid:
SHLPKPCFAESCVECSPCCA
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
66.1
0.5
1.7
81.09
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981