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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5390048_5391456_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5390048 - 5391456
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGAAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATTTCTGAAAT
Flanking Amino Acid:
FMIILSSAALAFEDINLEKR
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
79.2
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.4
0.46
1
59.5
44.9
Minor 5ss
43.3
-0.7
2.9
54.9
44.7
Minor BPS
63.5
0.5
1.5
78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981