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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5393051_5393691_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5393051 - 5393691
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
RALSRFEGIKVVVNALLGAI
Intron Amino Acid Position:
1122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
1.1
80.6
35.8
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981