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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5398187_5398900_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5398187 - 5398900
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTAGCATTAATC
Flanking Amino Acid:
KPQKPIPRPLNVFQGCLFDI
Intron Amino Acid Position:
1306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.1
39.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
25.7
-2.8
3
27.7
37.3
Minor BPS
57.2
0.21
1.7
65.34
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981