About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5399166_5400544_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5399166 - 5400544
Intron Length:
1379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TGTGTCTTGACA
Flanking Amino Acid:
DLVVVILSLATIGLAEGFSS
Intron Amino Acid Position:
1394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
79.3
0.66
1
81.7
27.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
68.4
0.57
1.4
74.54
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040731
5362715 - 5401695
38981