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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54029452_54033196_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54029452 - 54033196
Intron Length:
3745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
AFVLPGPLAEGNSSDSEEDR
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.2
0.68
0.8
76
32.6
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
IGFBP3
Ensembl Gene ID:
ENSAPLG00000016379
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017093
54028778 - 54043118
14341
ENSAPLT00000023443
54029061 - 54043118
14058