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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54036142_54042407_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54036142 - 54042407
Intron Length:
6266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTATGCTAATT
Flanking Amino Acid:
DKKGFYKKKQCRPSKGRKRG
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
79.9
0.67
0.9
76.7
37
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
46.7
-0.1
2.3
71.32
39.9

Associated Gene:

Gene:
IGFBP3
Ensembl Gene ID:
ENSAPLG00000016379
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023443
54029061 - 54043118
14058
ENSAPLT00000017093
54028778 - 54043118
14341