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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54042446_54043009_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54042446 - 54043009
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
PSKGRKRGYCWSDGNLHG*
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
61.3
39.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
25.7
-2.8
3.1
28.6
38.4
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
IGFBP3
Ensembl Gene ID:
ENSAPLG00000016379
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017093
54028778 - 54043118
14341