About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54052457_54053449_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54052457 - 54053449
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTAATAATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCCTAATA
Flanking Amino Acid:
NKNGFYHSKQCETSLDGESA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
80
0.75
1
78.6
31
Major PPT
61.2
0.25
1
52.1
41.4
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
71.9
0.68
1.6
83.62
30.2

Associated Gene:

Gene:
IGFBP1
Ensembl Gene ID:
ENSAPLG00000025569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030826
54049930 - 54057470
7541