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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54053579_54055323_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54053579 - 54055323
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
GATATTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTTAAAT
Flanking Amino Acid:
ISELKKWKEQGPCQKELYRA
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
0.9
66.7
40.1
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
61.7
0.44
1.4
70.66
40.2

Associated Gene:

Gene:
IGFBP1
Ensembl Gene ID:
ENSAPLG00000025569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030826
54049930 - 54057470
7541