About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54055503_54057091_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
54055503 - 54057091

Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACAGCGC

5'SS Class:
major

3'SS Sequence:
CATTCATTTCCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATATCAT

U12 Branch Point Sequence:
TTTTCCTTATCT

Flanking Amino Acid:
AGGMRAAELTDSIEPEDIPL

Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.6
0.42
1.1
52.2
44.9

Major BPS
79.4
0.73
1
80.1
32

Major PPT
79.3
0.66
0.9
69.9
40.2

Minor 5ss
29.4
-2.4
3.5
42
44.8

Minor BPS
85.6
1.19
1.4
100.1
28.3

Associated Gene:

Gene:
IGFBP1

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

54049930 - 54057470
7541