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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54092552_54093455_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54092552 - 54093455
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTGCA
5'SS Class:
major
3'SS Sequence:
TCCCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TCTTCTTTTCCC
Flanking Amino Acid:
DSTGVQGKIQVTEEVQRILK
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.1
34.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
82.7
0.74
0.7
80.4
25
Minor 5ss
33.1
-1.9
3.1
41.6
45
Minor BPS
44.4
-0.4
3.6
69.99
42.1

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355