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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54093581_54095771_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54093581 - 54095771
Intron Length:
2191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATTT
Flanking Amino Acid:
QSYNDFVLRVGINVGPVVAG
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.7
0.53
0.9
70.6
39.9
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
57.2
0.3
1.7
76.09
41.1

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355