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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_540950_542384_F

Intron Information:

Intron Rank:
139645
Intron Class:
major
Intron Phase:
Intron Coordinates:
540950 - 542384
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
69.4
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.8
80.7
30.4
Minor 5ss
29.2
-2.4
2.7
30.5
36.3
Minor BPS
50.8
0.02
1.7
63.33
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025065
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017270
540371 - 543806
3436