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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54100528_54100921_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
54100528 - 54100921
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAAACAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATATTTAACA
Flanking Amino Acid:
LNEIIADFDELMDKEYYKDI
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.2
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
57.9
0.18
1.2
57.9
40.6
Minor 5ss
39.4
-1.2
3.3
56.7
47.6
Minor BPS
69.3
0.6
1.4
74.73
36.1

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001092
54092213 - 54252567
160355
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355