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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54102408_54108254_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54102408 - 54108254
Intron Length:
5847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCCTTTATC
Flanking Amino Acid:
LRLDYLWAVQAEEERDDMER
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.9
0.76
0.8
77.5
31.3
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
78.4
0.88
1.5
86.75
30.6

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355