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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54111830_54116323_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54111830 - 54116323
Intron Length:
4494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATCTATAAAT
Flanking Amino Acid:
IMYLHVTRVQCFPGCLTIQI
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
64.7
0.54
1.7
83.41
36.9

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355
ENSAPLT00000048379
54092213 - 54252567
160355