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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54135467_54148507_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54135467 - 54148507
Intron Length:
13041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTCC
5'SS Class:
major
3'SS Sequence:
TTTTGATCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTTTTTGATC
Flanking Amino Acid:
YFIVPSHRRKIFPGLILSDI
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
66.7
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.8
0.58
1
70.9
38.9
Minor 5ss
43.7
-0.7
3.1
59.5
45.4
Minor BPS
68.8
0.58
1.1
73.3
31.5

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355