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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54148650_54167721_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54148650 - 54167721
Intron Length:
19072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CATATCTTAGCT
Flanking Amino Acid:
EMGLDMIDTITKVHITKTTL
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
59.5
0.38
1.6
73.58
43.1

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355