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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54179682_54189854_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54179682 - 54189854
Intron Length:
10173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCCTTTTTTACA
Flanking Amino Acid:
KIYIQRHDNVSILFADIVGF
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
90.9
0.92
0.6
86.5
24.5
Minor 5ss
40.2
-1.1
3.4
55.2
49
Minor BPS
58.1
0.25
1.6
65.81
41.1

Associated Gene:

Gene:
ADCY1
Ensembl Gene ID:
ENSAPLG00000001037
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048379
54092213 - 54252567
160355
ENSAPLT00000022791
54092213 - 54252567
160355
ENSAPLT00000001092
54092213 - 54252567
160355