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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5427016_5428561_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5427016 - 5428561
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTCCCCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
GCTGTTTTACTT
Flanking Amino Acid:
STSSSWNKYVEFTFTGIYTF
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
71
0.47
0.7
69.1
24.7
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
48.9
-0
1.7
62.87
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263